SNP Profiles matching PA 150 [PER]

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
1._PA_150_[PER]	CT	AG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
2._PA_150_[PER]	CT	AG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
3._PA_150_[PER]	CT	AG	GG	CC	TT	AC	TT	TT	CC	_	AA	GG	CC	AG
4._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
5._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
6._PA_90_[PER]	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
7._RUQ_1635	_	AG	GG	CC	_	_	_	TT	_	_	_	_	CC	AA
8._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
9._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
10._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
11._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
12._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
13._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
14._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
15._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
16._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
17._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
18._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
19._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
20._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
21._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
22._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
23._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
24._ICS_16	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
25._GC-08-067-1-89	CT	GG	GG	CC	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	CC	CT	CC	GG	GG	AA	TT	AC	CG	TT	CT	AC
1._PA_150_[PER]	CC	AA	CC	CT	CC	GG	GG	AA	TT	AC	CG	TT	CT	AC
2._PA_150_[PER]	CC	AA	CC	CT	CC	GG	GG	AA	TT	AC	CG	TT	CT	AC
3._PA_150_[PER]	CC	AA	CC	CT	CC	GG	GG	AA	TT	AC	CG	TT	CT	AC
4._ICS_16	CT	AA	_	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
5._GC-08-067-1-89	CT	AA	_	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
6._PA_90_[PER]	CT	AA	CG	CT	CC	GG	-	AA	CT	AC	GG	TT	CT	AA
7._RUQ_1635	_	_	_	_	CC	GG	GG	_	TT	CC	CC	TT	CT	AC
8._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
9._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
10._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
11._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
12._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
13._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
14._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
15._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
16._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
17._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
18._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
19._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
20._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
21._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
22._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
23._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
24._ICS_16	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA
25._GC-08-067-1-89	CT	AA	CG	CT	CC	GG	GG	AG	CT	AC	GG	TT	CT	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
1._PA_150_[PER]	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
2._PA_150_[PER]	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
3._PA_150_[PER]	AG	GG	AA	CC	GG	_	AA	CC	GG	AC	AA	GG	X_X	X_X
4._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
5._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
6._PA_90_[PER]	AG	GG	AA	CC	GG	-	AA	CC	GG	AC	AA	GG	X_X	X_X
7._RUQ_1635	AG	_	AA	CC	GG	CC	AC	CC	GG	AC	_	_	X_X	X_X
8._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
9._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
10._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
11._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
12._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
13._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
14._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
15._ICS_16	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
16._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
17._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
18._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
19._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
20._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
21._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
22._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
23._GC-08-067-1-89	AG	GG	AA	CC	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
24._ICS_16	AG	GG	AA	_	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X
25._GC-08-067-1-89	AG	GG	AA	_	GG	CC	AA	CC	GG	AC	AA	GG	X_X	X_X

Input profile: PA_150_[PER]

View View all Clone Any

Malaysian Cocoa Board (MCB), Malaysia

Location: Plot 1 - Row4 C0183 28

Dapeng Zhang, 2016

1._PA_150_[PER]

identical
40 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P70 1019

Dapeng Zhang, 2016

2._PA_150_[PER]

identical
40 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 679

Dapeng Zhang, 2016

3._PA_150_[PER]

identical
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D679

Dapeng Zhang, 2016

4._ICS_16

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 10

Dapeng Zhang, 2016

5._ICS_16 GC-08-067-1-89

92.3 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

6._PA_90_[PER]

92.1 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 627

Dapeng Zhang, 2014

7._PA_30_[PER] RUQ_1635

91.7 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

8._ICS_16

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 5 > FP

Dapeng Zhang, 2016

9._ICS_16

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 3 > FP

Dapeng Zhang, 2016

10._ICS_16

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 1 > FP

Dapeng Zhang, 2016

11._ICS_16

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 12

Dapeng Zhang, 2016

12._ICS_16

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 8

Dapeng Zhang, 2016

13._ICS_16

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 7

Dapeng Zhang, 2016

14._ICS_16

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 6

Dapeng Zhang, 2016

15._ICS_16

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._ICS_16 GC-08-067-1-89

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

17._ICS_16 GC-08-067-1-89

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

18._ICS_16 GC-08-067-1-89

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

19._ICS_16 GC-08-067-1-89

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

20._ICS_16 GC-08-067-1-89

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

21._ICS_16 GC-08-067-1-89

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

22._ICS_16 GC-08-067-1-89

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

23._ICS_16 GC-08-067-1-89

91.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

24._ICS_16

91 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 9 > FP

Dapeng Zhang, 2016

25._ICS_16 GC-08-067-1-89

91 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25